PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins | Zendy

Romina Oliva | Zendy; Janet M. Thornton | Zendy; Marialuisa PellegriniCalace | Zendy

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PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins

Author(s) -

Romina Oliva,

Janet M. Thornton,

Marialuisa PellegriniCalace

Publication year - 2009

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp545

Subject(s) - transmembrane protein , computer science , software , transmembrane domain , function (biology) , computational biology , resource (disambiguation) , data mining , bioinformatics , amino acid , biology , programming language , biochemistry , genetics , computer network , receptor

The increasing number of available atomic 3D structures of transmembrane channel proteins represents a valuable resource for better understanding their structure-function relationships and to eventually predict their selectivity. Herein, we present PoreLogo, an automatic tool for analysing, visualizing and comparing the amino acid composition of transmembrane channels and its conservation across the corresponding protein family.

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