COMPASS: a program for generating serial samples under an infinite sites model | Zendy

Mattias Jakobsson | Zendy

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COMPASS: a program for generating serial samples under an infinite sites model

Author(s) -

Mattias Jakobsson

Publication year - 2009

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp534

Subject(s) - compass , inference , population , computer science , genetic data , statistics , cartography , artificial intelligence , geography , mathematics , demography , sociology

The program COMPASS can generate samples that have been collected at various points in time from a population that is evolving according to a Wright-Fisher model. The samples are generated using coalescence simulations permitting various demographic scenarios and the program uses an infinite sites model to generate polymorphism data for the samples. By generating serially sampled population-genetic data, COMPASS allows investigating properties of polymorphism data that has been collected at different time points, and aid in making inference from ancient polymorphism data.

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