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Methods for labeling error detection in microarrays based on the effect of data perturbation on the regression model
Author(s) -
Chen Zhang,
Chunguo Wu,
Enrico Blanzieri,
You Zhou,
Yan Wang,
Wei Du,
Yanchun Liang
Publication year - 2009
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btp478
Subject(s) - support vector machine , computer science , artificial intelligence , pattern recognition (psychology) , algorithm , regression , data mining , dna microarray , source code , mathematics , statistics , biochemistry , gene expression , chemistry , gene , operating system
Mislabeled samples often appear in gene expression profile because of the similarity of different sub-type of disease and the subjective misdiagnosis. The mislabeled samples deteriorate supervised learning procedures. The LOOE-sensitivity algorithm is an approach for mislabeled sample detection for microarray based on data perturbation. However, the failure of measuring the perturbing effect makes the LOOE-sensitivity algorithm a poor performance. The purpose of this article is to design a novel detection method for mislabeled samples of microarray, which could take advantage of the measuring effect of data perturbations.

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