PathBuilder—open source software for annotating and developing pathway resources | Zendy

Kumaran Kandasamy | Zendy; Shivakumar Keerthikumar | Zendy; Rajesh Raju | Zendy; Thottethodi Subrahmanya Keshava Prasad | Zendy; Y. L. Ramachandra | Zendy; Sujatha Mohan | Zendy; Akhilesh Pandey | Zendy

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PathBuilder—open source software for annotating and developing pathway resources

Author(s) -

Kumaran Kandasamy,

Shivakumar Keerthikumar,

Rajesh Raju,

Thottethodi Subrahmanya Keshava Prasad,

Y. L. Ramachandra,

Sujatha Mohan,

Akhilesh Pandey

Publication year - 2009

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp453

Subject(s) - computer science , annotation , software , world wide web , application programming interface , mit license , visualization , download , license , web application , database , information retrieval , data mining , programming language , operating system , artificial intelligence

We have developed PathBuilder, an open-source web application to annotate biological information pertaining to signaling pathways and to create web-based pathway resources. PathBuilder enables annotation of molecular events including protein-protein interactions, enzyme-substrate relationships and protein translocation events either manually or through automated importing of data from other databases. Salient features of PathBuilder include automatic validation of data formats, built-in modules for visualization of pathways, automated import of data from other pathway resources, export of data in several standard data exchange formats and an application programming interface for retrieving existing pathway datasets.

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