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ESG: extended similarity group method for automated protein function prediction
Author(s) -
Meghana Chitale,
Troy Hawkins,
Changsoon Park,
Daisuke Kihara
Publication year - 2009
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btp309
Subject(s) - computer science , protein function prediction , annotation , similarity (geometry) , data mining , protein sequencing , nearest neighbor search , artificial intelligence , protein function , peptide sequence , biology , gene , genetics , image (mathematics)
Importance of accurate automatic protein function prediction is ever increasing in the face of a large number of newly sequenced genomes and proteomics data that are awaiting biological interpretation. Conventional methods have focused on high sequence similarity-based annotation transfer which relies on the concept of homology. However, many cases have been reported that simple transfer of function from top hits of a homology search causes erroneous annotation. New methods are required to handle the sequence similarity in a more robust way to combine together signals from strongly and weakly similar proteins for effectively predicting function for unknown proteins with high reliability.

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