PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes | Zendy

Timothy V. Pyrkov | Zendy; Anton O. Chugunov | Zendy; Nikolay A. Krylov | Zendy; Dmitry E. Nolde | Zendy; Roman G. Efremov | Zendy

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PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes

Author(s) -

Timothy V. Pyrkov,

Anton O. Chugunov,

Nikolay A. Krylov,

Dmitry E. Nolde,

Roman G. Efremov

Publication year - 2009

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp111

Subject(s) - platinum , visualization , computer science , biomolecule , java , chemistry , world wide web , materials science , nanotechnology , programming language , organic chemistry , data mining , catalysis

The PLATINUM (Protein-Ligand ATtractions Investigation NUMerically) web service is designed for analysis and visualization of hydrophobic/hydrophilic properties of biomolecules supplied as 3D-structures. Furthermore, PLATINUM provides a number of tools for quantitative characterization of the hydrophobic/hydrophilic match in biomolecular complexes e.g. in docking poses. These complement standard scoring functions. The calculations are based on the concept of empirical Molecular Hydrophobicity Potential (MHP).

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