NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results | Zendy

Jacques Lagnel | Zendy; Costas S. Tsigenopoulos | Zendy; Ioannis Iliopoulos | Zendy

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NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results

Author(s) -

Jacques Lagnel,

Costas S. Tsigenopoulos,

Ioannis Iliopoulos

Publication year - 2009

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp067

Subject(s) - computer science , parsing , java , open source , filter (signal processing) , selection (genetic algorithm) , software , operating system , programming language , artificial intelligence , computer vision

NOBLAST (New Options for BLAST) is an open source program that provides a new user-friendly tabular output format for various NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn, Tblastx, Mega BLAST and Psi BLAST) without any use of a parser and provides E-value correction in case of use of segmented BLAST database. JAMBLAST using the NOBLAST output allows the user to manage, view and filter the BLAST hits using a number of selection criteria.

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