Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling | Zendy

Armando ReyesPalomares | Zendy; Raúl Montañez | Zendy; Alejando Real-Chicharro | Zendy; Othmane Chniber | Zendy; Amine Kerzazi | Zendy; Ismael NavasDelgado | Zendy; Miguel Ángel Medina | Zendy; José F. AldanaMontes | Zendy; Francisca SánchezJiménez | Zendy

Open Access

Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling

Author(s) -

Armando ReyesPalomares,

Raúl Montañez,

Alejando Real-Chicharro,

Othmane Chniber,

Amine Kerzazi,

Ismael NavasDelgado,

Miguel Ángel Medina,

José F. AldanaMontes,

Francisca SánchezJiménez

Publication year - 2009

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp061

Subject(s) - computer science , ontology , software , visualization , software engineering , metabolic activity , systems biology , selection (genetic algorithm) , bioinformatics , data mining , biology , programming language , artificial intelligence , biological system , philosophy , epistemology

We present Systems Biology Metabolic Modeling Assistant (SBMM Assistant), a tool built using an ontology-based mediator, and designed to facilitate metabolic modeling through the integration of data from repositories that contain valuable metabolic information. This software can be used for the visualization, design and management of metabolic networks; selection, integration and storage of metabolic information; and as an assistant for kinetic modeling.

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