Prequips—an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data | Zendy

Nils Gehlenborg | Zendy; Wei Yan | Zendy; Inyoul Y. Lee | Zendy; Hyuntae Yoo | Zendy; Kay Nieselt | Zendy; Daehee Hwang | Zendy; Ruedi Aebersold | Zendy; Leroy Hood | Zendy

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Prequips—an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data

Author(s) -

Nils Gehlenborg,

Wei Yan,

Inyoul Y. Lee,

Hyuntae Yoo,

Kay Nieselt,

Daehee Hwang,

Ruedi Aebersold,

Leroy Hood

Publication year - 2009

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp005

Subject(s) - proteomics , computer science , software , visualization , systems biology , computational biology , data mining , chemistry , biology , programming language , biochemistry , gene

We describe an integrative software platform, Prequips, for comparative proteomics-based systems biology analysis that: (i) integrates all information generated from mass spectrometry (MS)-based proteomics as well as from basic proteomics data analysis tools, (ii) visualizes such information for various proteomic analyses via graphical interfaces and (iii) links peptide and protein abundances to external tools often used in systems biology studies.

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