Integrating and annotating the interactome using the MiMI plugin for cytoscape | Zendy

Jing Gao | Zendy; Alex Ade | Zendy; V. Glenn Tarcea | Zendy; Terry E. Weymouth | Zendy; Barbara R. Mirel | Zendy; H. V. Jagadish | Zendy; David J. States | Zendy

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Integrating and annotating the interactome using the MiMI plugin for cytoscape

Author(s) -

Jing Gao,

Alex Ade,

V. Glenn Tarcea,

Terry E. Weymouth,

Barbara R. Mirel,

H. V. Jagadish,

David J. States

Publication year - 2008

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btn501

Subject(s) - plug in , annotation , interactome , computer science , java , computational biology , information retrieval , world wide web , biology , programming language , gene , artificial intelligence , genetics

The MiMI molecular interaction repository integrates data from multiple sources, resolves interactions to standard gene names and symbols, links to annotation data from GO, MeSH and PubMed and normalizes the descriptions of interaction type. Here, we describe a Cytoscape plugin that retrieves interaction and annotation data from MiMI and links out to multiple data sources and tools. Community annotation of the interactome is supported.

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