Open AccessDockground protein–protein docking decoy set
Author(s) -
Shiyong Liu,
Ying Gao,
Ilya A. Vakser
Publication year - 2008
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btn497
Subject(s) - decoy , docking (animal) , computer science , macromolecular docking , computational biology , protein structure , chemistry , biology , biochemistry , medicine , receptor , nursing
A protein-protein docking decoy set is built for the Dockground unbound benchmark set. The GRAMM-X docking scan was used to generate 100 non-native and at least one near-native match per complex for 61 complexes. The set is a publicly available resource for the development of scoring functions and knowledge-based potentials for protein docking methodologies.
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