MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis | Zendy

Daehee Hwang | Zendy; Ning Zhang | Zendy; Hookeun Lee | Zendy; Eugene C. Yi | Zendy; Hui Zhang | Zendy; Inyoul Y. Lee | Zendy; Leroy Hood | Zendy; Ruedi Aebersold | Zendy

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MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis

Author(s) -

Daehee Hwang,

Ning Zhang,

Hookeun Lee,

Eugene C. Yi,

Hui Zhang,

Inyoul Y. Lee,

Leroy Hood,

Ruedi Aebersold

Publication year - 2008

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btn491

Subject(s) - java , pipeline (software) , computer science , r package , biomarker discovery , biomarker , computational biology , proteomics , chemistry , operating system , programming language , biology , biochemistry , gene

MS-BID (MS Biomarker Discovery Platform) is an integrative computational pipeline for biomarker discovery using LC-MS-based comparative proteomic analysis. This platform consists of several computational tools for: (i) detecting peptides in the collected patterns; (ii) matching detected peptides across a number of LC-MS datasets and (iii) selecting discriminatory peptides between classes of samples.

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