A toolkit for analysing large-scale plant small RNA datasets | Zendy

Simon Moxon | Zendy; Frank Schwach | Zendy; Tamás Dalmay | Zendy; Dan MacLean | Zendy; David J. Studholme | Zendy; Vincent Moulton | Zendy

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A toolkit for analysing large-scale plant small RNA datasets

Author(s) -

Simon Moxon,

Frank Schwach,

Tamás Dalmay,

Dan MacLean,

David J. Studholme,

Vincent Moulton

Publication year - 2008

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btn428

Subject(s) - suite , computer science , small rna , computational biology , rna , scale (ratio) , transfer rna , biology , genetics , gene , geography , archaeology , cartography

Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.

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