Open AccessSYCAMORE—a systems biology computational analysis and modeling research environment
Author(s) -
Andreas Weidemann,
Stefan Richter,
Matthias Stein,
Sven Sahle,
Ralph Gauges,
Razif R. Gabdoulline,
Irina Surovtsova,
Nils Semmelrock,
Bruno Besson,
Isabel Rojas,
Rebecca C. Wade,
Ursula Kummer
Publication year - 2008
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btn207
Subject(s) - license , computer science , order (exchange) , biology , operating system , business , finance
SYCAMORE is a browser-based application that facilitates construction, simulation and analysis of kinetic models in systems biology. Thus, it allows e.g. database supported modelling, basic model checking and the estimation of unknown kinetic parameters based on protein structures. In addition, it offers some guidance in order to allow non-expert users to perform basic computational modelling tasks.