Open AccessA novel genome-scale repeat finder geared towards transposons
Author(s) -
Xuehui Li,
Tamer Kahveci,
A. Mark Settles
Publication year - 2007
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btm613
Subject(s) - transposable element , genome , subsequence , vertex (graph theory) , computer science , genetics , combinatorics , biology , computational biology , graph , algorithm , mathematics , theoretical computer science , gene , mathematical analysis , bounded function
Repeats are ubiquitous in genomes and play important roles in evolution. Transposable elements are a common kind of repeat. Transposon insertions can be nested and make the task of identifying repeats difficult.
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