QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations | Zendy

Jian Yang | Zendy; Chengcheng Hu | Zendy; Han Hu | Zendy; Rongdong Yu | Zendy; Zhen Xia | Zendy; Xiuzi Ye | Zendy; Jun Zhu | Zendy

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QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations

Author(s) -

Jian Yang,

Chengcheng Hu,

Han Hu,

Rongdong Yu,

Zhen Xia,

Xiuzi Ye,

Jun Zhu

Publication year - 2008

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btm494

Subject(s) - quantitative trait locus , unix , epistasis , genetic architecture , graphical user interface , computer science , software , biology , inbred strain , computational biology , genetics , operating system , gene

QTLNetwork is a software package for mapping and visualizing the genetic architecture underlying complex traits for experimental populations derived from a cross between two inbred lines. It can simultaneously map quantitative trait loci (QTL) with individual effects, epistasis and QTL-environment interaction. Currently, it is able to handle data from F(2), backcross, recombinant inbred lines and double-haploid populations, as well as populations from specific mating designs (immortalized F(2) and BC(n)F(n) populations). The Windows version of QTLNetwork was developed with a graphical user interface. Alternatively, the command-line versions have the facility to be run in other prevalent operating systems, such as Linux, Unix and MacOS.

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