TreeSnatcher: coding trees from images | Zendy

Thomas Laubach | Zendy; Arndt von Haeseler | Zendy

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TreeSnatcher: coding trees from images

Author(s) -

Thomas Laubach,

Arndt von Haeseler

Publication year - 2007

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btm438

Subject(s) - executable , unix , computer science , java , software , tree (set theory) , os x , operating system , source code , mac os , programming language , process (computing) , documentation , coding (social sciences) , mathematics , combinatorics , statistics

TreeSnatcher is a GUI-driven JAVA application for the semi-automatic recognition of multifurcating phylogenetic trees in pixel images. The program accepts an image file as input and analyzes the topology and the metrics of a tree depicted. The analysis is carried out in a multiple-stage process using algorithms from image analysis. In the end, TreeSnatcher produces a Newick tree code that represents the tree structure optionally including branch lengths. TreeSnatcher can process trees with 100 leaves or more in a few seconds.

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