VisGenome: visualization of single and comparative genome representations | Zendy

Joanna Jakubowska | Zendy; Ela Hunt | Zendy; Matthew Chalmers | Zendy; Martin McBride | Zendy; Anna F. Dominiczak | Zendy

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VisGenome: visualization of single and comparative genome representations

Author(s) -

Joanna Jakubowska,

Ela Hunt,

Matthew Chalmers,

Martin McBride,

Anna F. Dominiczak

Publication year - 2007

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btm394

Subject(s) - visualization , computer science , computational biology , genome , software , artificial intelligence , biology , genetics , programming language , gene

VisGenome visualizes single and comparative representations for the rat, the mouse and the human chromosomes at different levels of detail. The tool offers smooth zooming and panning which is more flexible than seen in other browsers. It presents information available in Ensembl for single chromosomes, as well as homologies (orthologue predictions including ortholog one2one, apparent ortholog one2one, ortholog many2many) for any two chromosomes from different species. The application can query supporting data from Ensembl by invoking a link in a browser.

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