DNA reference alignment benchmarks based on tertiary structure of encoded proteins | Zendy

Hyrum Carroll | Zendy; Wesley A. Beckstead | Zendy; Timothy D. O’Connor | Zendy; Mark Ebbert | Zendy; Mark Clement | Zendy; Quinn Snell | Zendy; David A. McClellan | Zendy

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DNA reference alignment benchmarks based on tertiary structure of encoded proteins

Author(s) -

Hyrum Carroll,

Wesley A. Beckstead,

Timothy D. O’Connor,

Mark Ebbert,

Mark Clement,

Quinn Snell,

David A. McClellan

Publication year - 2007

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btm389

Subject(s) - computer science , dna , computational biology , sequence alignment , structural alignment , protein tertiary structure , genetics , biology , peptide sequence , gene , biochemistry

Multiple sequence alignments (MSAs) are at the heart of bioinformatics analysis. Recently, a number of multiple protein sequence alignment benchmarks (i.e. BAliBASE, OXBench, PREFAB and SMART) have been released to evaluate new and existing MSA applications. These databases have been well received by researchers and help to quantitatively evaluate MSA programs on protein sequences. Unfortunately, analogous DNA benchmarks are not available, making evaluation of MSA programs difficult for DNA sequences.

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