Nucleotide composition string selection in HIV-1 subtyping using whole genomes | Zendy

XiaoMeng Wu | Zendy; Zhipeng Cai | Zendy; XiuFeng Wan | Zendy; Hoàng Công Tín | Zendy; Randy Goebel | Zendy; Guohui Lin | Zendy

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Nucleotide composition string selection in HIV-1 subtyping using whole genomes

Author(s) -

XiaoMeng Wu,

Zhipeng Cai,

XiuFeng Wan,

Hoàng Công Tín,

Randy Goebel,

Guohui Lin

Publication year - 2007

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btm248

Subject(s) - subtyping , phylogenetic tree , genome , string (physics) , computational biology , biology , selection (genetic algorithm) , executable , composition (language) , computer science , genetics , programming language , gene , artificial intelligence , mathematics , linguistics , philosophy , mathematical physics

The availability of the whole genomic sequences of HIV-1 viruses provides an excellent resource for studying the HIV-1 phylogenies using all the genetic materials. However, such huge volumes of data create computational challenges in both memory consumption and CPU usage.

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