PLMaddon: a power-law module for the Matlab™ SBToolbox | Zendy

Julio Vera | Zendy; Cheng Sun | Zendy; Yvonne Oertel | Zendy; Olaf Wolkenhauer | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

PLMaddon: a power-law module for the Matlab™ SBToolbox

Author(s) -

Julio Vera,

Cheng Sun,

Yvonne Oertel,

Olaf Wolkenhauer

Publication year - 2007

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btm245

Subject(s) - ode , toolbox , mit license , computer science , matlab , logarithm , set (abstract data type) , power law , robustness (evolution) , ordinary differential equation , software , theoretical computer science , law , mathematics , mathematical optimization , computational science , differential equation , programming language , mathematical analysis , biochemistry , statistics , chemistry , political science , gene

PLMaddon is a General Public License (GPL) software module designed to expand the current version of the SBToolbox (a Matlab toolbox for systems biology; www.sbtoolbox.org) with a set of functions for the analysis of power-law models, a specific class of kinetic models, set in ordinary differential equations (ODE) and in which the kinetic orders can have positive/negative non-integer values. The module includes functions to generate power-law Taylor expansions of other ODE models (e.g. Michaelis-Menten type models), as well as algorithms to estimate steady-states. The robustness and sensitivity of the models can also be analysed and visualized by computing the power-law's logarithmic gains and sensitivities.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research