Libaffy: software for processing Affymetrix(R) GeneChip(R) data | Zendy

Steven A. Eschrich | Zendy; Andrew M. Hoerter | Zendy

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Libaffy: software for processing Affymetrix(R) GeneChip(R) data

Author(s) -

Steven A. Eschrich,

Andrew M. Hoerter

Publication year - 2007

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btm127

Subject(s) - computer science , software , gene chip analysis , computational biology , microarray , biology , genetics , operating system , gene , gene expression

Affymetrix GeneChip microarrays are increasingly used in gene expression studies and in greater number. A software library was developed that supports Affymetrix file formats and implements two popular summary algorithms (MAS5.0 and RMA). The library is modular in design for integration into larger systems and processing pipelines. Additionally, a graphical interface (GENE) was developed to allow end-user access to the functionality within the library.

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