MedicCyc: a biochemical pathway database forMedicago truncatula | Zendy

Ewa Urbańczyk-Wochniak | Zendy; Lloyd W. Sumner | Zendy

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MedicCyc: a biochemical pathway database forMedicago truncatula

Author(s) -

Ewa Urbańczyk-Wochniak,

Lloyd W. Sumner

Publication year - 2007

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btm040

Subject(s) - medicago truncatula , metabolic pathway , functional genomics , computational biology , context (archaeology) , kegg , biology , genomics , genome , database , computer science , transcriptome , gene , genetics , paleontology , gene expression , symbiosis , bacteria

There is an imperative need to integrate functional genomics data to obtain a more comprehensive systems-biology view of the results. We believe that this is best achieved through the visualization of data within the biological context of metabolic pathways. Accordingly, metabolic pathway reconstruction was used to predict the metabolic composition for Medicago truncatula and these pathways were engineered to enable the correlated visualization of integrated functional genomics data.

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