TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities | Zendy

Shengyin Gu | Zendy; Iain Anderson | Zendy; Victor Kunin | Zendy; Michael J. Cipriano | Zendy; Simon Minovitsky | Zendy; Gunther H. Weber | Zendy; Nina Amenta | Zendy; Bernd Hamann | Zendy; Inna Dubchak | Zendy

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TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities

Author(s) -

Shengyin Gu,

Iain Anderson,

Victor Kunin,

Michael J. Cipriano,

Simon Minovitsky,

Gunther H. Weber,

Nina Amenta,

Bernd Hamann,

Inna Dubchak

Publication year - 2007

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btl643

Subject(s) - computer science , set (abstract data type) , annotation , visualization , tree (set theory) , sql , context (archaeology) , information retrieval , data mining , database , artificial intelligence , programming language , biology , mathematical analysis , paleontology , mathematics

We describe a general multiplatform exploratory tool called TreeQ-Vista, designed for presenting functional annotations in a phylogenetic context. Traits, such as phenotypic and genomic properties, are interactively queried from a user-provided relational database with a user-friendly interface which provides a set of tools for users with or without SQL knowledge. The query results are projected onto a phylogenetic tree and can be displayed in multiple color groups. A rich set of browsing, grouping and query tools are provided to facilitate trait exploration, comparison and analysis.

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