GenoProfiler: batch processing of high-throughput capillary fingerprinting data | Zendy

Frank M. You | Zendy; MingCheng Luo | Zendy; Yong Q. Gu | Zendy; Gerard R. Lazo | Zendy; Karin R. Deal | Zendy; Jan Dvořák | Zendy; Olin D. Anderson | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

GenoProfiler: batch processing of high-throughput capillary fingerprinting data

Author(s) -

Frank M. You,

MingCheng Luo,

Yong Q. Gu,

Gerard R. Lazo,

Karin R. Deal,

Jan Dvořák,

Olin D. Anderson

Publication year - 2006

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btl494

Subject(s) - fingerprint (computing) , computer science , software , fragment (logic) , throughput , capillary electrophoresis , dna profiling , batch processing , operating system , programming language , chromatography , chemistry , artificial intelligence , dna , biochemistry , wireless

High-throughput content fingerprinting techniques employing capillary electrophoresis place new demands on the editing of fingerprint files for the downstream contig assembly program, FPC. A cross-platform software application, GenoProfiler, was developed for automated editing of sized fingerprinting profiles generated by the ABI Genetic Analyzers. The batch-processing module extracts the sized fragment information directly from the ABI raw trace files, or from data files exported from GeneMapper or other size calling software, removes the background noise and undesired fragments, and generates fragment size files compatible with the FPC software.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research