UniGene Tabulator: a full parser for the UniGene format | Zendy

Luca Lenzi | Zendy; Flavia Frabetti | Zendy; Federica Facchin | Zendy; Raffaella Casadei | Zendy; Lorenza Vitale | Zendy; Silvia Canaider | Zendy; Paolo Carinci | Zendy; Maria Zannotti | Zendy; Pierluigi Strippoli | Zendy

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UniGene Tabulator: a full parser for the UniGene format

Author(s) -

Luca Lenzi,

Flavia Frabetti,

Federica Facchin,

Raffaella Casadei,

Lorenza Vitale,

Silvia Canaider,

Paolo Carinci,

Maria Zannotti,

Pierluigi Strippoli

Publication year - 2006

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btl425

Subject(s) - unigene , parsing , computer science , usable , search engine indexing , database , software , information retrieval , data mining , bioinformatics , programming language , world wide web , biology , expressed sequence tag , genetics , complementary dna , gene

UniGene Tabulator 1.0 provides a solution for full parsing of UniGene flat file format; it implements a structured graphical representation of each data field present in UniGene following import into a common database managing system usable in a personal computer. This database includes related tables for sequence, protein similarity, sequence-tagged site (STS) and transcript map interval (TXMAP) data, plus a summary table where each record represents a UniGene cluster. UniGene Tabulator enables full local management of UniGene data, allowing parsing, querying, indexing, retrieving, exporting and analysis of UniGene data in a relational database form, usable on Macintosh (OS X 10.3.9 or later) and Windows (2000, with service pack 4, XP, with service pack 2 or later) operating systems-based computers.

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