Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression
Author(s) -
Florian Gnad,
John Parsch
Publication year - 2006
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btl422
Subject(s) - biology , gene , genetics , drosophila melanogaster , anopheles gambiae , microarray , microarray analysis techniques , drosophila (subgenus) , codon usage bias , dna microarray , gene expression , computational biology , genome , malaria , immunology
We describe Sebida, a database of genes with sex-biased expression. The database integrates results from multiple, independent microarray studies comparing male and female gene expression in Drosophila melanogaster, Drosophila simulans and Anopheles gambiae. Sebida uses standard nomenclature, which allows individual genes to be compared across different microarray platforms and to be queried by gene name, symbol, or annotation number. In addition to ratios of male/female expression for each gene, Sebida also contains information useful for evolutionary studies, such as local recombination rate, degree of codon bias and interspecific divergence at synonymous and non-synonymous sites.
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