SynView: a GBrowse-compatible approach to visualizing comparative genome data | Zendy

Haiming Wang | Zendy; Yanqi Su | Zendy; Aaron J. Mackey | Zendy; Eileen Kraemer | Zendy; Jessica C. Kissinger | Zendy

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SynView: a GBrowse-compatible approach to visualizing comparative genome data

Author(s) -

Haiming Wang,

Yanqi Su,

Aaron J. Mackey,

Eileen Kraemer,

Jessica C. Kissinger

Publication year - 2006

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btl389

Subject(s) - perl , computer science , interactivity , variety (cybernetics) , web application , genome , visualization , world wide web , programming language , data mining , artificial intelligence , biology , biochemistry , gene

We present SynView, a simple and generic approach to dynamically visualize multi-species comparative genome data. It is a light-weight application based on the popular and configurable web-based GBrowse framework. It can be used with a variety of databases and provides the user with a high degree of interactivity. The tool is written in Perl and runs on top of the GBrowse framework. It is in use in the PlasmoDB (http://www.PlasmoDB.org) and the CryptoDB (http://www.CryptoDB.org) projects and can be easily integrated into other cross-species comparative genome projects.

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