Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network | Zendy

Patricia Buendia | Zendy; Giri Narasimhan | Zendy

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Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network

Author(s) -

Patricia Buendia,

Giri Narasimhan

Publication year - 2006

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btl387

Subject(s) - computer science , tree (set theory) , graphical user interface , sampling (signal processing) , selection (genetic algorithm) , sequence (biology) , operating system , artificial intelligence , biology , mathematics , mathematical analysis , filter (signal processing) , computer vision , genetics

Serial NetEvolve is a flexible simulation program that generates DNA sequences evolved along a tree or recombinant network. It offers a user-friendly Windows graphical interface and a Windows or Linux simulator with a diverse selection of parameters to control the evolutionary model. Serial NetEvolve is a modification of the Treevolve program with the following additional features: simulation of serially-sampled data, the choice of either a clock-like or a variable rate model of sequence evolution, sampling from the internal nodes and the output of the randomly generated tree or network in our newly proposed NeTwick format.

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