Metatool 5.0: fast and flexible elementary modes analysis | Zendy

Axel von Kamp | Zendy; Stefan Schuster | Zendy

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Metatool 5.0: fast and flexible elementary modes analysis

Author(s) -

Axel von Kamp,

Stefan Schuster

Publication year - 2006

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btl267

Subject(s) - computer science , scripting language , license , matlab , programming language , octave (electronics) , mit license , operating system , physics , optics

Elementary modes analysis is a powerful tool in the constraint-based modeling of metabolic networks. In recent years, new approaches to calculating elementary modes in biochemical reaction networks have been developed. As a consequence, the program Metatool, which is one of the first programs dedicated to this purpose, has been reimplemented in order to make use of these new approaches. The performance of Metatool has been significantly increased and the new version 5.0 can now be run inside the GNU octave or Matlab environments to allow more flexible usage and integration with other tools.

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