The iRMSD: a local measure of sequence alignment accuracy using structural information | Zendy

Fabrice Armougom | Zendy; Sébastien Moretti | Zendy; Vladimir Keduas | Zendy; Cédric Notredame | Zendy

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The iRMSD: a local measure of sequence alignment accuracy using structural information

Author(s) -

Fabrice Armougom,

Sébastien Moretti,

Vladimir Keduas,

Cédric Notredame

Publication year - 2006

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btl218

Subject(s) - sequence (biology) , benchmarking , measure (data warehouse) , computer science , multiple sequence alignment , sequence alignment , r package , superposition principle , algorithm , data mining , artificial intelligence , computational science , mathematics , peptide sequence , biology , biochemistry , genetics , marketing , gene , business , mathematical analysis

We introduce the iRMSD, a new type of RMSD, independent from any structure superposition and suitable for evaluating sequence alignments of proteins with known structures.

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