TRFMA: a web-based tool for terminal restriction fragment length polymorphism analysis based on molecular weight | Zendy

Yoshio Nakano | Zendy; Toru Takeshita | Zendy; Yoshihisa Yamashita | Zendy

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TRFMA: a web-based tool for terminal restriction fragment length polymorphism analysis based on molecular weight

Author(s) -

Yoshio Nakano,

Toru Takeshita,

Yoshihisa Yamashita

Publication year - 2006

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btl186

Subject(s) - xml , computer science , fragment (logic) , terminal restriction fragment length polymorphism , restriction fragment length polymorphism , the internet , web browser , web site , web server , world wide web , web application , database , biology , genetics , programming language , polymerase chain reaction , gene

TRFMA provides a Web environment for analyzing T-RFLP results based on molecular weights of the fragments, rather than the numbers of nucleotides, to increase accuracy. The 16S rRNA data are saved as an XML file containing around 650 sequences (light version) and a MySQL database containing around 50 000 sequences (full version), which are connected to Web server via PHP5 and manipulated on an Internet browser.

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