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Polynomial model approach for resynchronization analysis of cell-cycle gene expression data
Author(s) -
Peng Qiu,
Z. Jane Wang,
K. J. Ray Liu
Publication year - 2006
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btl017
Subject(s) - computational biology , microarray analysis techniques , gene , identification (biology) , cell cycle , computer science , expression (computer science) , gene expression , biology , functional genomics , microarray , gene expression profiling , genomics , algorithm , genetics , genome , botany , programming language
Identification of genes expressed in a cell-cycle-specific periodical manner is of great interest to understand cyclic systems which play a critical role in many biological processes. However, identification of cell-cycle regulated genes by raw microarray gene expression data directly is complicated by the factor of synchronization loss, thus remains a challenging problem. Decomposing the expression measurements and extracting synchronized expression will allow to better represent the single-cell behavior and improve the accuracy in identifying periodically expressed genes.

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