The MGED Ontology: a resource for semantics-based description of microarray experiments | Zendy

Patricia L. Whetzel | Zendy; Helen Parkinson | Zendy; Helen C. Causton | Zendy; Liju Fan | Zendy; Jennifer Fostel | Zendy; Gilberto Fragoso | Zendy; Laurence Gamé | Zendy; Mervi Heiskanen | Zendy; Norman Morrison | Zendy; Philippe RoccaSerra | Zendy; SusannaAssunta Sansone | Zendy; Chris Taylor | Zendy; Joseph White | Zendy; Christian J. Stoeckert | Zendy

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The MGED Ontology: a resource for semantics-based description of microarray experiments

Author(s) -

Patricia L. Whetzel,

Helen Parkinson,

Helen C. Causton,

Liju Fan,

Jennifer Fostel,

Gilberto Fragoso,

Laurence Gamé,

Mervi Heiskanen,

Norman Morrison,

Philippe RoccaSerra,

SusannaAssunta Sansone,

Chris Taylor,

Joseph White,

Christian J. Stoeckert

Publication year - 2006

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btl005

Subject(s) - computer science , ontology , annotation , microarray databases , terminology , semantics (computer science) , information retrieval , microarray analysis techniques , external data representation , ontology based data integration , data exchange , data mining , database , semantic web , artificial intelligence , programming language , biology , epistemology , philosophy , gene expression , biochemistry , linguistics , gene

The generation of large amounts of microarray data and the need to share these data bring challenges for both data management and annotation and highlights the need for standards. MIAME specifies the minimum information needed to describe a microarray experiment and the Microarray Gene Expression Object Model (MAGE-OM) and resulting MAGE-ML provide a mechanism to standardize data representation for data exchange, however a common terminology for data annotation is needed to support these standards.

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