TRAP: automated classification, quantification and annotation of tandemly repeated sequences | Zendy

Tiago J. P. Sobreira | Zendy; Alan Mitchell Durham | Zendy; Arthur Gruber | Zendy

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TRAP: automated classification, quantification and annotation of tandemly repeated sequences

Author(s) -

Tiago J. P. Sobreira,

Alan Mitchell Durham,

Arthur Gruber

Publication year - 2005

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bti809

Subject(s) - annotation , trap (plumbing) , computer science , artificial intelligence , computational biology , natural language processing , pattern recognition (psychology) , biology , physics , meteorology

TRAP, the Tandem Repeats Analysis Program, is a Perl program that provides a unified set of analyses for the selection, classification, quantification and automated annotation of tandemly repeated sequences. TRAP uses the results of the Tandem Repeats Finder program to perform a global analysis of the satellite content of DNA sequences, permitting researchers to easily assess the tandem repeat content for both individual sequences and whole genomes. The results can be generated in convenient formats such as HTML and comma-separated values. TRAP can also be used to automatically generate annotation data in the format of feature table and GFF files.

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