Gene Time Eχpression Warper: a tool for alignment, template matching and visualization of gene expression time series | Zendy

Jo Criel | Zendy; Elena Tsiporkova | Zendy

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Gene Time Eχpression Warper: a tool for alignment, template matching and visualization of gene expression time series

Author(s) -

Jo Criel,

Elena Tsiporkova

Publication year - 2005

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bti787

Subject(s) - dynamic time warping , computer science , visualization , feature (linguistics) , matching (statistics) , java , series (stratigraphy) , template matching , pattern recognition (psychology) , artificial intelligence , data mining , programming language , biology , image (mathematics) , mathematics , paleontology , philosophy , statistics , linguistics

An application tool for alignment, template matching and visualization of gene expression time series is presented. The core algorithm is based on dynamic time warping techniques used in the speech recognition field. These techniques allow for non-linear (elastic) alignment of temporal sequences of feature vectors and consequently enable detection of similar shapes with different phases.

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