OxfordGrid: a web interface for pairwise comparative map views | Zendy

Hongyu Yang | Zendy; Alan R. Gingle | Zendy

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OxfordGrid: a web interface for pairwise comparative map views

Author(s) -

Hongyu Yang,

Alan R. Gingle

Publication year - 2005

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bti698

Subject(s) - pairwise comparison , scripting language , computer science , grid , row , synteny , schema (genetic algorithms) , linkage (software) , interface (matter) , computer graphics (images) , artificial intelligence , chromosome , information retrieval , database , biology , genetics , programming language , mathematics , operating system , geometry , gene , bubble , maximum bubble pressure method

OxfordGrid is a web application and database schema for storing and interactively displaying genetic map data in a comparative, dot-plot, fashion. Its display is composed of a matrix of cells, each representing a pairwise comparison of mapped probe data for two linkage groups or chromosomes. These are arranged along the axes with one forming grid columns and the other grid rows with the degree and pattern of synteny/colinearity between the two linkage groups manifested in the cell's dot density and structure. A mouse click over the selected grid cell launches an image map-based display for the selected cell. Both individual and linear groups of mapped probes can be selected and displayed. Also, configurable links can be used to access other web resources for mapped probe information.

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