HAPLOT: a graphical comparison of haplotype blocks, tagSNP sets and SNP variation for multiple populations | Zendy

ShuangXi Gu | Zendy; A.J. Pakstis | Zendy; K. Kidd | Zendy

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HAPLOT: a graphical comparison of haplotype blocks, tagSNP sets and SNP variation for multiple populations

Author(s) -

ShuangXi Gu,

A.J. Pakstis,

K. Kidd

Publication year - 2005

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bti649

Subject(s) - linkage disequilibrium , haplotype , snp , variation (astronomy) , biology , perl , linkage (software) , genetics , evolutionary biology , population , genetic variation , single nucleotide polymorphism , computational biology , allele , computer science , genotype , gene , medicine , world wide web , physics , environmental health , astrophysics

Understanding of human variation relevant to association studies can benefit from population comparison, especially comparing populations in the same geographical region. Variations in linkage disequilibrium patterns, in tagSNP sets, and in SNP heterozygosities among populations can be used to infer the evolutionary pattern. We present here a win32 system based Perl/Tk application for visual comparisons of these variations in different populations.

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