MFAML: a standard data structure for representing and exchanging metabolic flux models | Zendy

Hongseok Yun | Zendy; DongYup Lee | Zendy; Joonwoo Jeong | Zendy; Seunghyun Lee | Zendy; Sang Yup Lee | Zendy

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MFAML: a standard data structure for representing and exchanging metabolic flux models

Author(s) -

Hongseok Yun,

DongYup Lee,

Joonwoo Jeong,

Seunghyun Lee,

Sang Yup Lee

Publication year - 2005

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bti502

Subject(s) - flux (metallurgy) , computer science , data mining , chemistry , organic chemistry

MFAML is a standard data structure designed for the formal representation and effective exchange of metabolic flux models. It allows for the explicit description of stationary states of a metabolic system by defining environmental/genetic conditions of the system, e.g. flux measurements, balancing constraints and physiological objectives as well as basic information on metabolites and reactions. In addition, a library of MFAML comprising a model parser and a converter provides an open framework for establishing the pipeline from metabolic modeling to metabolic flux analysis.

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