ROBIN: a tool for genome rearrangement of block-interchanges | Zendy

C. L. Lu | Zendy; Timothy C. Wang | Zendy; Ying Lin | Zendy; Chuan Yi Tang | Zendy

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ROBIN: a tool for genome rearrangement of block-interchanges

Author(s) -

C. L. Lu,

Timothy C. Wang,

Ying Lin,

Chuan Yi Tang

Publication year - 2005

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bti412

Subject(s) - genome , sequence (biology) , chromosome , block (permutation group theory) , computer science , chromosomal rearrangement , genetics , biology , computational biology , combinatorics , mathematics , gene , karyotype

ROBIN is a web server for analyzing genome rearrangement of block-interchanges between two chromosomal genomes. It takes two or more linear/circular chromosomes as its input, and computes the number of minimum block-interchange rearrangements between any two input chromosomes for transforming one chromosome into another and also determines an optimal scenario taking this number of rearrangements. The input can be either bacterial-size sequence data or landmark-order data. If the input is sequence data, ROBIN will automatically search for the identical landmarks that are the homologous/conserved regions shared by all the input sequences.

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