Protein structure topological comparison, discovery and matching service
Author(s) -
Gilleain Torrance,
David Gilbert,
Ioannis Michalopoulos,
David R. Westhead
Publication year - 2005
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bti331
Subject(s) - computer science , matching (statistics) , computational biology , service (business) , topology (electrical circuits) , data mining , biology , mathematics , combinatorics , statistics , economy , economics
We describe a fold level fast protein comparison and motif matching facility based on the TOPS representation of structure. This provides an update to a previous service at the EBI, with a better graph matching with faster results and visualization of both the structures being compared against and the common pattern of each with the target domain.
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