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Implicit motif distribution based hybrid computational kernel for sequence classification
Author(s) -
Volkan Atalay,
Rengül Çetin-Atalay
Publication year - 2004
Publication title -
computer applications in the biosciences
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1460-2059
pISSN - 0266-7061
DOI - 10.1093/bioinformatics/bti212
Subject(s) - computer science , sequence motif , motif (music) , kernel (algebra) , sequence (biology) , artificial intelligence , computational biology , pattern recognition (psychology) , mathematics , genetics , biology , gene , combinatorics , physics , acoustics
We designed a general computational kernel for classification problems that require specific motif extraction and search from sequences. Instead of searching for explicit motifs, our approach finds the distribution of implicit motifs and uses as a feature for classification. Implicit motif distribution approach may be used as modus operandi for bioinformatics problems that require specific motif extraction and search, which is otherwise computationally prohibitive.

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