PDBML: the representation of archival macromolecular structure data in XML | Zendy

John D. Westbrook | Zendy; Nobutoshi Ito | Zendy; Haruki Nakamura | Zendy; Kim Henrick | Zendy; Helen M. Berman | Zendy

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PDBML: the representation of archival macromolecular structure data in XML

Author(s) -

John D. Westbrook,

Nobutoshi Ito,

Haruki Nakamura,

Kim Henrick,

Helen M. Berman

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bti082

Subject(s) - protein data bank (rcsb pdb) , computer science , protein data bank , efficient xml interchange , xml , information retrieval , xml schema (w3c) , xml validation , streaming xml , xml schema editor , database , data exchange , xml framework , metadata , document structure description , world wide web , xml encryption , biology , biochemistry , protein structure

The Protein Data Bank (PDB) has recently released versions of the PDB Exchange dictionary and the PDB archival data files in XML format collectively named PDBML. The automated generation of these XML files is driven by the data dictionary infrastructure in use at the PDB. The correspondences between the PDB dictionary and the XML schema metadata are described as well as the XML representations of PDB dictionaries and data files.

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