TFExplorer: integrated analysis database for predicted transcription regulatory elements | Zendy

JinSoo Kim | Zendy; Jungmin Seo | Zendy; Young Seek Lee | Zendy; Sangsoo Kim | Zendy

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TFExplorer: integrated analysis database for predicted transcription regulatory elements

Author(s) -

JinSoo Kim,

Jungmin Seo,

Young Seek Lee,

Sangsoo Kim

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bti048

Subject(s) - promoter , computational biology , footprinting , regulatory sequence , gene , biology , transcription factor , database , dna footprinting , phylogenetic tree , transcription (linguistics) , genetics , computer science , gene expression , linguistics , philosophy

TFExplorer is a web-based integrated database for predicted regulatory elements in human, mouse and rat. It shows predicted binding sites of transcription factors in the promoter regions, along with their phylogenetic footprinting information. In addition, TFExplorer can search for genes that have a given sequence pattern in their promoter regions using the motif-searching method.

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