Open AccesstPatternHunter: gapped, fast and sensitive translated homology search
Author(s) -
Derek Kisman,
Ming Li,
Bin Ma,
Li Wang
Publication year - 2004
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bti035
Subject(s) - software , computer science , homology (biology) , frame (networking) , translation (biology) , information retrieval , theoretical computer science , artificial intelligence , programming language , biology , genetics , amino acid , gene , telecommunications , messenger rna
New ideas, spaced seeds and gapped alignment before 6-frame translation are implemented for translated homology search in tPatternHunter. The new software compares favorably with tBLASTx.
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