OntologyTraverser: an R package for GO analysis | Zendy

Andrew Young | Zendy; Nathan L. Whitehouse | Zendy; Jaechoon Cho | Zendy; Chad A. Shaw | Zendy

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OntologyTraverser: an R package for GO analysis

Author(s) -

Andrew Young,

Nathan L. Whitehouse,

Jaechoon Cho,

Chad A. Shaw

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bth495

Subject(s) - java , computer science , r package , software , gene ontology , software package , web application , software engineering , world wide web , operating system , programming language , gene , biology , genetics , gene expression

Gene Ontology (GO) annotations have become a major tool for analysis of genome-scale experiments. We have created OntologyTraverser--an R package for GO analysis of gene lists. Our system is a major advance over previous work because (1) the system can be installed as an R package, (2) the system uses Java to instantiate the GO structure and the SJava system to integrate R and Java and (3) the system is also deployed as a publicly available web tool.

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