A method for estimating stochastic noise in large genetic regulatory networks
Author(s) -
David Orrell,
Stephen A. Ramsey,
Pedro de Atauri,
Hamid Bolouri
Publication year - 2004
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bth479
Subject(s) - computer science , noise (video) , stochastic modelling , software , genetic algorithm , stochastic process , mathematical optimization , data mining , machine learning , artificial intelligence , mathematics , statistics , image (mathematics) , programming language
Genetic regulatory networks are often affected by stochastic noise, due to the low number of molecules taking part in certain reactions. The networks can be simulated using stochastic techniques that model each reaction as a stochastic event. As models become increasingly large and sophisticated, however, the solution time can become excessive; particularly if one wishes to determine the effect on noise of changes to a series of parameters, or the model structure. Methods are therefore required to rapidly estimate stochastic noise.
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