DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences | Zendy

Huiqing Liu | Zendy; Hao Han | Zendy; Jinyan Li | Zendy; Limsoon Wong | Zendy

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DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences

Author(s) -

Huiqing Liu,

Hao Han,

Jinyan Li,

Limsoon Wong

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bth437

Subject(s) - computer science , software , toolbox , polyadenylation , dna , benchmark (surveying) , computational biology , artificial intelligence , data mining , biology , genetics , rna , gene , programming language , geodesy , geography

DNAFSMiner (DNA Functional Sites Miner) is a web-based software toolbox to recognize functional sites in nucleic acid sequences. Currently in this toolbox, we provide two software: TIS Miner and Poly(A) Signal Miner. The TIS Miner can be used to predict translation initiation sites in vertebrate DNA/mRNA/cDNA sequences, and the Poly(A) Signal Miner can be used to predict polyadenylation [poly(A)] signals in human DNA sequences. The prediction results are better than those by literature methods on two benchmark applications. This good performance is mainly attributable to our unique learning method. DNAFSMiner is available free of charge for academic and non-profit organizations.

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