SARGE: a tool for creation of putative genetic networks
Author(s) -
Oliver Shaw,
Colin R. Harwood,
L. Jason Steggles,
Anil Wipat
Publication year - 2004
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bth395
Subject(s) - computer science , simulated annealing , cluster analysis , graph , data mining , representation (politics) , graph drawing , series (stratigraphy) , visualization , theoretical computer science , artificial intelligence , machine learning , biology , politics , political science , law , paleontology
SARGE is a tool for creating, visualizing and manipulating a putative genetic network from time series microarray data. The tool assigns potential edges through time-lagged correlation, incorporates a clustering mechanism, an interactive visual graph representation and employs simulated annealing for network optimization.
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