Speeding up whole-genome alignment by indexing frequency vectors | Zendy

Tamer Kahveci | Zendy; Vebjorn Ljosa | Zendy; Ambuj K. Singh | Zendy

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Speeding up whole-genome alignment by indexing frequency vectors

Author(s) -

Tamer Kahveci,

Vebjorn Ljosa,

Ambuj K. Singh

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bth212

Subject(s) - substring , computer science , search engine indexing , hash function , string (physics) , hash table , genome , visualization , string searching algorithm , approximate string matching , data structure , data mining , theoretical computer science , information retrieval , artificial intelligence , pattern matching , mathematics , biology , biochemistry , computer security , gene , mathematical physics , programming language

Many biological applications require the comparison of large genome strings. Current techniques suffer from high computational and I/O costs.

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